Percentage-Based Medical Billing: Why It’s a Compliance Trap for Medicare, Medicaid, and Many Commercial Plans

Percentage-based billing (charging a percent of collections or revenue) can be prohibited for Medicare and Medicaid payment arrangements and can violate state fee-splitting rules for commercial claims. Learn what’s risky, what’s illegal in certain contexts, and how to structure compliant billing fees. 

What “percentage-based billing” actually means 

In a percentage-based billing model, a billing company (or management services organization) is paid a percentage of the practice’s revenue or collections—for example, 5%–9% of amounts collected, or a percent of gross charges billed. 

It’s common in the market because it feels “aligned” with performance. The problem is that, in healthcare reimbursement, how you pay vendors can become a fraud-and-abuse issue—especially when government program dollars are involved, and even when they are not. 

Why percentage-based billing is a problem in Medicare and Medicaid 

1) Medicare reassignment rules restrict paying billing agents based on collections 

When a provider/supplier uses an arrangement where Medicare payments are directed to an agent (i.e., reassignment-type mechanics), Medicare rules require that the agent’s compensation not be related to amounts billed or collected and not depend on actual collection 

In practice, a “percent of collections” fee is the opposite of that standard. 

2) Medicaid rules also prohibit percentage-based compensation for business agents in relevant payment structures 

Federal Medicaid regulations similarly allow payment to a business agent (like a billing service) only if the agent’s compensation is tied to the cost of processing and not related on a percentage basis to amounts billed or collected, and not dependent on collection.  

This is why percentage-based billing is frequently described as “illegal” for Medicaid/Medical Assistance claims in many compliance discussions: the model can collide directly with federal Medicaid payment rules depending on how the payment flow/agency relationship is set up. 

3) Even when not per se “always illegal,” it is a high-risk structure under the Anti-Kickback Statute framework 

The federal Anti-Kickback Statute (AKS) is triggered by “remuneration” intended to induce or reward referrals of items/services paid by federal healthcare programs.  

And the AKS safe harbor commonly used for service arrangements requires that compensation methodology be set in advancefair market value, and not determined in a manner that takes into account the volume or value of federal program business.  

A percentage-of-revenue model can be difficult to defend under that framework because it automatically scales with revenue, which can look like compensation that varies with the volume/value of business. 

New York is a clear example: Medicaid explicitly warned against percentage-of-collections billing 

Some states go further with explicit Medicaid program guidance. New York’s Medicaid program has stated plainly that billing agents are prohibited from charging Medicaid providers a percentage of the amount claimed or collected, and it has tied these arrangements to fee-splitting concerns.  

That kind of state-level enforcement posture is a major reason why a “common industry practice” can still be a significant compliance exposure. 

“But we only do commercial claims.” Why it can still be illegal (or discipline-triggering) in several states 

Even if a practice says, “We don’t bill Medicare/Medicaid,” percentage-based billing can still be prohibited or restricted because many states treat it as fee-splitting or a corporate practice of medicine issue. 

Two examples that illustrate the theme: 

  • Tennessee: its fee-splitting statute addresses dividing professional fees and makes violations a Class B misdemeanor, while also describing limited circumstances where percentage-based compensation may be permitted if reasonably related to the value of goods/services (this is exactly why state-by-state review matters).  
  • Virginia: its statutes prohibit dividing professional fees in return for referrals and include enumerated exceptions; again, the legal analysis turns on structure and intent.  

Separately, legal commentary has long noted that even “private pay only” arrangements can create risk if they influence billing/coding practices that spill into federal program claims.  

Bottom line: In multiple states, percentage-based vendor fees tied to professional revenue can be viewed as impermissible fee-splitting (even on commercial claims), or at minimum an arrangement that triggers licensure/disciplinary scrutiny. 

Why regulators dislike percentage-based billing (even when the vendor is legitimate) 

Percentage-based compensation can create incentives that regulators view as inherently dangerous: 

  • Upcoding and aggressive billing pressure (because higher reimbursement = higher vendor pay). 
  • Selective follow-up that prioritizes high-dollar claims over clinical/ethical considerations. 
  • Blurry lines between billing services vs. marketing/referral generation. 

This is why industry guidance frequently cautions that percentage-based billing arrangements elevate fraud-and-abuse risk, even when the parties believe they are acting appropriately.  

What to do instead: compliant fee structures that reduce risk 

A safer approach is to use compensation that is: 

  • Set in advance 
  • Fair market value (FMV) 
  • Commercially reasonable 
  • Not tied to collections or reimbursement amounts 

Common compliant models include: 

  1. Flat monthly fee (clearly defined scope; change-order process for added services) 
  2. Per-claim/per-encounter fee (not dependent on reimbursement; consider caps) 
  3. Hourly rate for defined tasks (coding edits, A/R follow-up, appeals, reporting) 
  4. Tiered flat fee by volume bands (e.g., 0–500 claims/month, 501–1,000, etc.—tiers set in advance, not percent-based) 
  5. Separate fees for clearly distinct services (e.g., credentialing vs. billing vs. call center), each priced at FMV 

And ensure the agreement includes: 

  • Detailed service description and deliverables 
  • Compliance responsibilities (coding follows official guidelines; no “maximize at all costs” language) 
  • Audit rights and documentation retention 
  • Clear prohibition on contingency/percentage compensation for any federal program work (when applicable) 
  • A process to adjust pricing prospectively (not retroactively tied to collections) 

The MedCycle Solutions recommendation 

If your billing vendor is paid a percentage of collections, treat it as a red-flag arrangement—especially if you bill Medicare, Medicaid/Medical Assistance, or any mixed payer book. 

MedCycle Solutions can help you: 

  • Inventory your current vendor compensation models 
  • Identify which claims/payers create the highest legal exposure 
  • Restructure agreements into FMV, set-in-advance pricing 
  • Build a defensible compliance file (contract language, rationale, scope mapping, and oversight) 

Compliance note: This article is for general informational purposes and is not legal advice. Because legality varies by payer mechanics and state law, involve qualified healthcare counsel when you restructure vendor agreements. 

 

 

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